| Author | Title | Year | Journal/Proceedings | Reftype | DOI/URL |
|---|---|---|---|---|---|
| Dreo, J., Laudy, C., Lobentanzer, S., Baric, M., Gaydukova, E. and Schwikowski, B. | Reproducible Mapping of Tabular Data into Semantic Knowledge Graphs with OntoWeaver and BioCypher | 2024 | 27th International Conference on Information Fusion | inproceedings | URL |
| Dreo, J., Lobentanzer, S., Gaydukova, E., Baric, M., Maarala, A.I., Muranen, T., Oikkonen, J., Bolelli, F., Pipoli, V., Isoviita, V.-M. and others | High-level biomedical data integration in a semantic knowledge graph with oncodashkb for finding personalized actionable drugs in ovarian cancer | 2024 | Cancer Genomics, Multiomics and Computational Biology | inproceedings | URL |
| López-Ibáñez, M., Vermetten, D., Dreo, J. and Doerr, C. | Using the Empirical Attainment Function for Analyzing Single-objective Black-box Optimization Algorithms | 2024 | IEEE Transactions on Evolutionary Computation | article | DOI |
| Renau, Q., Dreo, J. and Hart, E. | Ealain: A Camera Simulation Tool to Generate Instances for Multiple Classes of Optimisation Problem | 2024 | Proceedings of the Genetic and Evolutionary Computation Conference Companion, pp. 151-154 | inproceedings | DOI |
| Quemy, A., Schoenauer, M. and Dreo, J. | MultiZenoTravel: a Tunable Benchmark for Multi-Objective Planning with Known Pareto Front | 2023 | online | URL | |
| Dreo, J. | Feedback on the use of PDDL solvers in an industrial R&D context | 2023 | misc | URL | |
| Dreo, J. | Quantile-like measures on multi-dimensional distributions of closed sets | 2023 | misc | URL | |
| Ameri, A., Miloradović, B., Çürüklü, B., Papadopoulos, A.V., Ekström, M. and Dreo, J. | Interplay of Human and AI Solvers on a Planning Problem | 2023 | 2023 IEEE International Conference on Systems, Man, and Cybernetics (SMC), pp. 3166-3173 | inproceedings | DOI |
| Lobentanzer, S., Aloy, P., Baumbach, J., Bohar, B., Carey, V.J., Charoentong, P., Danhauser, K., Doğan, T., Dreo, J., Dunham, I. and others | Democratizing knowledge representation with BioCypher | 2023 | Nature Biotechnology Vol. 41(8), pp. 1056-1059 |
article | DOI |
| Dreo, J. | UNIX Shell Cheatsheet | 2022 | Computational Systems Biomedicine Seminar | misc | URL |
| Zakiev, E., Dreo, J., Santarelli, M. and Schwikowski, B. | Statistical Discovery of Transcriptomic Cancer Signatures using Multimodal Local Search | 2022 | PGMO Days | inproceedings | URL |
| Laudy, C., Fossier, S. and Dreo, J. | Tackling Threatening behavior through a Semantic Approach | 2022 | 25th International Conference on Information Fusion (FUSION), pp. 1-8 | inproceedings | URL |
| Renau, Q., Dreo, J., Peres, A., Semet, Y., Doerr, C. and Doerr, B. | Automated Algorithm Selection for Radar Network Configuration | 2022 | GECCO '22: Genetic and Evolutionary Computation Conference | inproceedings | DOI URL |
| Dreo, J. | AutoML for Bioinformatics | 2022 | , pp. 31Computational Biology Department Seminar | misc | URL |
| Dreo, J. | De la planification centralisée à l'intelligence en essaim avec des drones | 2022 | , pp. 27 | misc | URL |
| Dreo, J. | Randomized Optimization Framework tailored for Benchmarking & Auto-Design | 2022 | ``Benchmarked'' workshop | misc | URL |
| Dreo, J. | Frictionlesser | 2022 | software | URL | |
| Dreo, J. | Practical Tools for Improving Reproducibility (of Bioinformatics) | 2021 | , pp. 37School: TranSYS Summer School | misc | URL |
| Dreo, J. and López-Ibáñez, M. | Extensible Logging and Empirical Attainment Function for IOHexperimenter | 2021 | report | URL | |
| Dreo, J., Doerr, C., Aziz-Alaoui, A. and Zheng, A. | Using Irace, Paradiseo and IOHprofiler for Large-Scale Algorithm Configuration | 2021 | 8th COSEAL workshop | misc | URL |
| Dreo, J., Liefooghe, A., Vérel, S., Schoenauer, M., Merelo, J.J., Quemy, A., Bouvier, B. and Gmys, J. | Paradiseo: From a Modular Framework for Evolutionary Computation to the Automated Design of Metaheuristics | 2021 | Proceeding Companion of the Genetic and Evolutionary Computation Conference (GECCO) | inproceedings | URL |
| Aziz-Alaoui, A., Doerr, C. and Dreo, J. | Towards Large Scale Automated Algorithm Design by Integrating Modular Benchmarking Frameworks | 2021 | Computing Research Repository (CoRR) | inproceedings | URL |
| Bäck, T., Bennet, P., de Nobel, J., Doerr, C., Dreo, J., Rakotoarison, H., Rapin, J., Teytaud, O., Vermetten, D., Wang, H. and Ye, F. | Results from the Joint Nevergrad and IOHprofiler Open Optimization Competition | 2021 | SIGEVOlution newsletter Vol. 14 |
article | URL |
| Bolelli, F., Pipoli, V., Lehtonen, O., Lavikka, K., Isoviita, V.-M., Maarala, I., Bontempo, G. and Dreo, J. | Oncodash | 2021 | software | URL | |
| Renau, Q., Dreo, J., Doerr, C. and Doerr, B. | Towards Explainable Exploratory Landscape Analysis: Extreme Feature Selection for Classifying BBOB Functions | 2021 | 24th international conference on evolutionary computation (EvoStar) | inproceedings | URL |
| Renau, Q., Doerr, C., Dreo, J. and Doerr, B. | Exploratory Landscape Analysis is Strongly Sensitive to the Sampling Strategy | 2020 | Vol. 12270Parallel Problem Solving from Nature, PPSN XVI, Leiden, Sep. 5--9, Proceedings Part II, pp. 139-153 |
inproceedings | DOI URL |
| Brunet, J., Sousselier, T., Dreo, J. and Jaulin, L. | Method for controlling a set of robots, and set of robots | 2019 | (US10303170B2) | patent | URL |
| Buet, B., Mirebeau, J.-M., van Gennip, Y., Desquilbet, F., Dreo, J., Barbaresco, F., Leonardi, G.P., Masnou, S. and Schönlieb, C.-B. | Partial differential equations and variational methods for geometric processing of images | 2019 | The SMAI journal of computational mathematics Vol. 5, pp. 109-128 |
article | DOI URL |
| Doerr, C., Dreo, J. and Kerschke, P. | Making a case for (Hyper-)parameter tuning as benchmark problems | 2019 | Proc. Companion of the Genetic and Evolutionary Computation Conference, GECCO, Prague, Czech Republic, July 13--17, pp. 1755-1764 | inproceedings | DOI URL |
| Dreo, J., Doerr, C. and Semet, Y. | Coupling the design of benchmark with algorithm in landscape-aware solver design | 2019 | Proc. Companion of the Genetic and Evolutionary Computation Conference, Prague, Czech Republic, Jul. 13--17, pp. 1419-1420 | inproceedings | DOI URL |
| Dreo, J., Desquilbet, F., Barbaresco, F. and Mirebeau, J.-M. | Netted Multi-Function Radars Positioning and Modes Selection by Non-Holonomic Fast Marching Computation of Highest Threatening Trajectories by CMA-ES Optimization | 2019 | International Radar Conference, Sep. 23--27, Toulon, France, pp. 1-6 | inproceedings | DOI URL |
| Renau, Q., Dreo, J., Doerr, C. and Doerr, B. | Expressiveness and robustness of landscape features | 2019 | Proc. Companion of the Genetic and Evolutionary Computation Conference, GECCO, Prague, Czech Republic, July 13--17, pp. 2048-2051 | inproceedings | DOI URL |
| Belkhir, N., Dreo, J., Savéant, P. and Schoenauer, M. | Per instance algorithm configuration of CMA-ES with limited budget | 2017 | Proc. of the Genetic and Evolutionary Comp. Conf., Berlin, Jul. 15--19, pp. 681-688 | inproceedings | DOI |
| Mirebeau, J. and Dreo, J. | Automatic Differentiation of Non-holonomic Fast Marching for Computing Most Threatening Trajectories Under Sensors Surveillance | 2017 | Vol. 10589Proc. of Geometric Science of Information, Paris, France, Nov. 7--9, pp. 791-800 |
inproceedings | DOI |
| Belkhir, N., Dreo, J., Savéant, P. and Schoenauer, M. | Feature Based Algorithm Configuration: A Case Study with Differential Evolution | 2016 | Vol. 9921Proc. of Parallel Problem Solving from Nature, PPSN XIV, Edinburgh, UK, September 17--21, pp. 156-166 |
inproceedings | DOI |
| Belkhir, N., Dreo, J., Savéant, P. and Schoenauer, M. | Surrogate Assisted Feature Computation for Continuous Problems | 2016 | Vol. 10079Learning and Intelligent Optimization, LION 10, Ischia, Italy, May 29--June 1, Selected Papers, pp. 17-31 |
inproceedings | URL |
| Belkhir, N., Dreo, J., Savéant, P. and Schoenauer, M. | Parameter Setting for Multicore CMA-ES with Large Populations | 2015 | Vol. 9554Proc. of Artificial Evolution, EA XII, Lyon, France, October 26--28, Selected Papers, pp. 109-122 |
inproceedings | DOI |
| Quemy, A., Schoenauer, M., Vidal, V., Dreo, J. and Savéant, P. | Solving Large MultiZenoTravel Benchmarks with Divide-and-Evolve | 2015 | Vol. 8994Learning and Intelligent Optimization, LION 9, Lille, France, January 12--15, Selected Papers, pp. 262-267 |
inproceedings | DOI |
| Sousselier, T., Dreo, J. and Sevaux, M. | Line formation algorithm in a swarm of reactive robots constrained by underwater environment | 2015 | Expert Syst. Appl. Vol. 42(12), pp. 5117-5127 |
article | DOI |
| Auletto, R., Dreo, J. and Savéant, P. | Method and apparatus for calculating a combined airport navigation graph, method and system for generating an aircraft ground trailer, computer program product | 2014 | (FR3030853B1) | patent | URL |
| Auletto, R., Dreo, J. and Savéant, P. | Method and System for Generating a ground runway track from an aircraft in an airport domain, computer program product | 2014 | (FR3030854B1) | patent | URL |
| Laudy, C., Dreo, J. and Gouguenheim, C. | Applying MapReduce principle to high level information fusion | 2014 | 17th International Conference on Information Fusion, Salamanca, Spain, Jul. 7--10, pp. 1-8 | inproceedings | URL |
| Khouadjia, M.R., Schoenauer, M., Vidal, V., Dreo, J. and Savéant, P. | Pareto-Based Multiobjective AI Planning | 2013 | Proc. of the 23rd Int. Joint Conf. on Artificial Intelligence, Beijing, Aug. 3--9, pp. 2321-2327 | inproceedings | URL |
| Khouadjia, M.R., Schoenauer, M., Vidal, V., Dreo, J. and Savéant, P. | Quality Measures of Parameter Tuning for Aggregated Multi-Objective Temporal Planning | 2013 | Vol. 7997Proc. of the Learning and Intelligent Optimization, LION 7, Catania, Italy, January 7--11, Selected Papers, pp. 341-356 |
inproceedings | DOI |
| Brunet, J.P., Jaulin, L., Sousselier, T. and Dreo, J. | Methode for controlling a robot assembly and robot assembly | 2012 | (FR2999305A1) | patent | URL |
| Sousselier, T., Dreo, J. and Brunet, J. | Line formation algorithm in a self-organized swarm of micro-underwater unmanned vehicles | 2012 | IEEE International Conference on Robotics and Biomimetics, ROBIO, Guangzhou, China, Dec. 11--14, pp. 520-525 | inproceedings | DOI |
| Bertucat, É., Pasquereau, H.J., Dreo, J. and Savéant, P. | Device and method for evaluating an anti-aerial defense based on probability of interception and time of preavis calculated for each track of an enemy aerodyne | 2011 | (FR2975784B1) | patent | URL |
| Candan, C., Dreo, J., Savéant, P. and Vidal, V. | Parallel divide-and-evolve: Experiments with OpenMP on a multicore machine | 2011 | Proceedings of the 13th annual conference on Genetic and evolutionary computation, pp. 1571-1578 | inproceedings | DOI |
| Dreo, J., Savéant, P., Schoenauer, M. and Vidal, V. | Divide-and-evolve: the marriage of descartes and darwin | 2011 | Vol. 91Proc. of the 7th international planning competition, Freiburg, Germany, pp. 155 |
inproceedings | URL |
| Aligne, F., Dreo, J. and Mattioli, J. | AMETRINE: a humanitarian camp management system | 2009 | Disaster Management and Human Health Risk, WIT Transactions on the Built Environment Vol. 110, pp. 77-86 |
article | DOI |
| Dreo, J. | Using performance fronts for parameter setting of stochastic metaheuristics | 2009 | Proc. Companion of the Genetic and Evolutionary Comp. Conf., Montreal, Québec, Canada, Jul. 8--12, pp. 2197-2200 | inproceedings | DOI |
| Dreo, J., Aumasson, J., Tfaili, W. and Siarry, P. | Adaptive Learning Search, a New Tool to Help Comprehending Metaheuristics | 2007 | Int. J. Artif. Intell. Tools Vol. 16(3), pp. 483-505 |
article | DOI |
| Dreo, J. and Siarry, P. | Hybrid Continuous Interacting Ant Colony aimed at Enhanced Global Optimization | 2007 | Algorithmic Oper. Res. Vol. 2(1), pp. 52-64 |
article | URL |
| Lamiri, M., Dreo, J. and Xie, X. | Operating Room Planning with Random Surgery Times | 2007 | IEEE Conf. on Automation Science and Engineering, Sep. 22--25, Scottsdale, Arizona, USA, pp. 521-526 | inproceedings | DOI |
| Tfaili, W., Dreo, J. and Siarry, P. | Fitting of an ant colony approach to dynamic optimization through a new set of test functions | 2007 | International Journal of Computational Intelligence Research Vol. 3(3), pp. 205-218 |
article | URL |
| Dreo, J. and Siarry, P. | An ant colony algorithm aimed at dynamic continuous optimization | 2006 | Appl. Math. Comput. Vol. 181(1), pp. 457-467 |
article | DOI |
| Dreo, J. and Siarry, P. | Comparaison de métaheuristiques | 2006 | 7e congrès de la société française de recherche opérationnelle et d'aide à la décision | inproceedings | |
| Dreo, J., Pétrowski, A., Siarry, P. and Taillard, É. | Metaheuristics for hard optimization: methods and case studies | 2006 | book | ||
| Dreo, J. and Siarry, P. | Métaheuristiques pour l'optimisation et auto-organisation dans les systèmes biologiques | 2006 | Tech. Sci. Informatiques Vol. 25(2), pp. 221-240 |
article | DOI |
| Dreo, J., Nunes, J.C. and Siarry, P. | Robust rigid registration of retinal angiograms through optimization | 2006 | Comput. Medical Imaging Graph. Vol. 30(8), pp. 453-463 |
article | DOI |
| Dreo, J. and Siarry, P. | Continuous interacting ant colony algorithm based on dense heterarchy | 2004 | Future Gener. Comput. Syst. Vol. 20(5), pp. 841-856 |
article | DOI |
| Dreo, J. and Siarry, P. | Dynamic Optimization Through Continuous Interacting Ant Colony | 2004 | Vol. 3172Proc. of Ant Colony Optimization and Swarm Intelligence, ANTS IV, Brussels, Belgium, September 5--8, pp. 422-423 |
inproceedings | DOI |
| Dreo, J. | Adaptation de la métaheuristique des colonies de fourmis pour l'optimisation difficile en variables continues. Application en génie biologique et médical. | 2003 | School: Paris 12 Val de Marne University, Créteil, France | phdthesis | URL |
| Dreo, J., Pétrowski, A., Siarry, P. and Taillard, É. | Métaheuristiques pour l'optimisation difficile | 2003 | book | ||
| Dreo, J. and Siarry, P. | A New Ant Colony Algorithm Using the Heterarchical Concept Aimed at Optimization of Multiminima Continuous Functions | 2002 | Vol. 2463Proc. of the third International Workshop on Ant Algorithms, ANTS, Brussels, Belgium, Sep. 12--14, Proceedings, pp. 216-221 |
inproceedings | DOI |